============================================================================= Run Date: DEC 21, 1998 Designation: ONC*2.11*19 Package : ONC - ONCOLOGY Priority: Mandatory Version : 2.11 SEQ #19 Status: Released ============================================================================= Subject: SEER EOD 3RD EDITION Category: - Routine - Data Dictionary - Input Template - Sort Template Description: ============ This patch is available via FTP in a KIDS distribution file. The Host File is named ONC211P19.KID and is located in the [ANONYMOUS.SOFTWARE] directory of the following CIO Field Offices: CIOFO FTP ADDRESS ----- ----------- Albany 152.127.1.5 Hines 152.129.1.110 SLC 152.131.2.1 All data dictionary changes/additions have been reviewed and approved by the Data Base Administrator. This patch contains the following enhancements and problem resolutions: 1) SEER EXTENT OF DISEASE -- 1988 (THIRD EDITION) ABS *..Abstracting/Printing ... EE Abstract Edit Primary 3. Stage of Disease at Diagnosis The third edition SEER Extent of Disease -- 1988 codes have been added. These codes are used by the EXTENSION (#165.5,30) and LYMPH NODES (#165.5,31) fields for 1998 or later primaries. The prostate gland now has both clinical and pathologic extensions. For this reason a new field, PATHOLOGIC EXTENSION (#165.5,30.1) has been added for PROSTATE (C61.9) primaries. 2) NEW TREATMENT FIELDS: a) "AT THIS FACILITY" FIELDS b) SCOPE OF LYMPH NODE SURG DATE c) SURGERY OTH SITES/NODES DATE ABS *..Abstracting/Printing ... EE Abstract Edit Primary 4. First Course of Treatment The following new fields have been added to the ONCOLOGY PRIMARY (#165.5) file: #58.4 NON CA-DIR SURG @FACILITY ROADS page 183 #58.5 NON CA-DIR SURG @FACILITY DATE #50.2 SURG PRIMARY SITE @FACILITY ROADS page 190 #50.3 SURG PRIMARY SITE @FACILITY DT #138.1 SCOPE OF LN SURG @FACILITY ROADS page 190 #138.2 SCOPE OF LYMPH NODE SURG DATE #138.3 SCOPE OF LN SURG @FACILITY DT #140.1 NUM NODES REMOVED @FACILITY ROADS page 190 #139.1 SURG OTH SITE/NODE @FACILITY ROADS page 190 #139.2 SURGERY OTH SITES/NODES DATE #139.3 SURG OTH SITE/NODE @FAC DATE #51.4 RADIATION @FACILITY ROADS page 200 #51.5 RADIATION @FACILITY DATE #53.3 CHEMOTHERAPY @FACILITY ROADS page 231 #53.4 CHEMOTHERAPY @FACILITY DATE #54.3 HORMONE THERAPY @FACILITY ROADS page 240 #54.4 HORMONE THERAPY @FACILITY DATE #55.3 IMMUNOTHERAPY @FACILITY ROADS page 244 #55.4 IMMUNOTHERAPY @FACILITY DATE #57.3 OTHER TREATMENT @FACILITY ROADS page 248 #57.4 OTHER TREATMENT @FACILITY DATE These fields will be used for all 1998 or later cases. 3) PRIMARY ABSTRACT NOT-COMPLETE Report NOIS ASH-0898-31002 ABSTRACT STATUS NOT COMPLETE REPORT CONTAINS COMPLETED ABS ABS *..Abstracting/Printing ... NC Print Abstract NOT Complete List The PRIMARY ABSTRACT NOT-COMPLETE Report was erroneously including primaries with an ABSTRACT STATUS (#165.5,91) of "Complete". The ONCO ABSTRACT NOT-COMPLETE Sort Template has been modified to eliminate primaries with an ABSTRACT STATUS of "Complete". 4) BIOPSY PROCEDURE (#165.5,141) GUIDANCE (#165.5,142) NOIS ANN-0898-41856 ONC*2.11*18 CAUSING PROBLEM? NOIS LIT-1098-70496 BPIT+2^ONCOTNMX, Undef X NOIS LIT-1098-70498 GUIT+2^ONCOTNMX, Undef X ABS *..Abstracting/Printing ... EE Abstract Edit Primary 3. Stage of Disease at Diagnosis If the user entered a response to the above prompts that failed the input transform (e.g. .1), the package would abort with an "undefined variable X" error. The input transforms for these fields has been modified to resolve this problem. 5) ANNUAL SUMMARY REPORT FORUM message: Patch 15, Alpha Testing [#25901204] item 7c. UTL *..Utility Options ... RS Registry Summary Reports A Annual a) The ANNUAL SUMMARY REPORT was listing SKIN twice: as "SKIN (EX reproductive)" and as "SKIN". The "SKIN (EX reproductive)" entry contained the correct skin statistics while the "SKIN" totals were all zeros. The "SKIN" entry has been removed from the report. b) CLINICAL STAGE GROUP (#165.5,38) and PATHOLOGIC STAGE GROUP (#165.5,88) NA (Not applicable - code 88) stuffing The NA stuffing logic for these fields did not include stuffing of the STAGE GROUPING-AJCC (#165.5,38.5) field. This omission was causing inaccuracies in the Annual Summary Report by counting primaries with a stage group of NA (Not applicable) as INC (Incomplete). The stuffing logic now includes the STAGE GROUPING-AJCC field. Existing primaries affected by this error will be corrected by the pre-install routine. 6) AJCC STAGING BASIS (#165.5,36) NOIS BIG-0697-71576 (notes 9,14,15) Oncology Site Manager Menu ER Report of accessions requiring additional input This option was incorrectly checking the AJCC STAGING BASIS field. If the AJCC STAGING BASIS was blank, the routine logic was assuming that the TNM codes were also blank and listing them as missing required data. Since both clinical and pathologic staging now have their own fields, the AJCC STAGING BASIS field is no longer necessary. The AJCC STAGING BASIS check has been removed. 7) INCORRECT POINTERS IN STATE (#3) FIELD OF ZIP CODE (#5.11) FILE NOIS ALB-0698-51661 Error in Zip Code file with a State code NOIS BHH-0698-42176 Zip Code file has many states with #80 Several pointer values in the STATE field of the ZIP CODE file were either missing or incorrect. These pointer values have been re-set with the correct values. 8) CANCER-DIRECTED SURGERY ABS *..Abstracting/Printing ... EE Abstract Edit Primary 4. First Course of Treatment If the SURGERY OF PRIMARY SITE (#165.5,58.2) value was 00 (None) or 99 (Unknown; death certificate ONLY), the following fields would be automatically stuffed: #138 SCOPE OF LYMPH NODE SURGERY #140 NUMBER OF NODES REMOVED #23 RECONSTRUCTION/RESTORATION This stuffing relationship has been removed. These field are now independent of the SURGERY OF PRIMARY SITE value. 9) CLASS OF CASE (#165.5,.04) in relation to the following ONCOLOGY PRIMARY (#165.5) fields: REPORTING HOSPITAL (#.03) DX FACILITY (#5) REFERRING FACILITY (#6) TRANSFER FACILITY (#7) SURGERY HOSPITAL (#50.1) RADIATION HOSPITAL (#51.1) RADIATION THERAPY TO CNS HOSP (#52.1) CHEMOTHERAPY HOSPITAL (#53.1) HORMONE THERAPY HOSPITAL (#54.1) IMMUNOTHERAPY HOSPITAL (#55.1) OTHER TREATMENT HOSPITAL (#57.1) If CLASS OF CASE = 0 Dx here, 1st rx ew = 1 Dx here & 1st rx here = 4 Dx or 1st rx before ref date = 5 Dx at autopsy DX FACILITY will be stuffed with the REPORTING HOSPITAL value If CLASS OF CASE = 2 Dx ew, 1st rx here = 3 Dx ew, 1st rx ew DX FACILITY will be stuffed with the REFERRING HOSPITAL value If CLASS OF CASE = 0 Dx here, 1st rx ew REFERRING FACILITY will be stuffed with NONE If CLASS OF CASE = 1 Dx here & 1st rx here REFERRING FACILITY and TRANSFER FACILITY will be stuffed with NONE If CLASS OF CASE = 2 Dx ew, 1st rx here TRANSFER FACILITY will be stuffed with NONE If CLASS OF CASE = 1 Dx here & 1st rx here = 2 Dx ew, 1st rx here SURGERY HOSPITAL RADIATION HOSPITAL RADIATION THERAPY TO CNS HOSP CHEMOTHERAPY HOSPITAL HORMONE THERAPY HOSPITAL IMMUNOTHERAPY HOSPITAL OTHER TREATMENT HOSPITAL will be stuffed with the REPORTING HOSPITAL value if the treatment was administered. 10) AGE AT DX (#165.5,4) When the patient's DATE DX (#165.5,3) fell on their birthday, the AGE AT DX algorithm was computing the AGE AT DX incorrectly. This has been fixed. 11) 1998 PROSTATE PCE STUDY QUESTION #12: INITIAL METHOD OF DIAGNOSIS As per the "News from the Commission on Cancer" Volume 9 No 5 Page 5 ("Patient Care Evaluation Studies: Clarifications"), the code values of the following ONCOLOGY PRIMARY (#165.5) fields have been changed: Old value New value --------- --------- Code 0: Not done No Code 1: Done Yes Code 9: Unknown if done Unknown Fields affected --------------- #661 CLINICAL DX WITH BONE LESION #662 CLINICAL DX BY RECTAL EXAM #663 CYTOLOGY #664 DIGITAL TRANSRECTAL BIOPSY #665 INCIDENTAL FINDING IN TURP FOR BENIGN DISEASE #666 NEEDLE BIOPSY, NOS #667 PERINEAL BIOPSY #668 PSA #669 TRUS GUIDED BIOPSY #670 TURP, NOS 12) INFRA/SUPRA (#165.5,21.5) Since there is no formal classification or staging system for 5th edition brain cases, the INFRA/SUPRA prompt has been removed for these cases. 13) NUMBER OF TREATMENTS (#165.5,56) ABS *..Abstracting/Printing ... PA Print Complete Abstract (132c) When printing the complete abstract, the "Number of Treatments" value in the Radiation portion of the FIRST COURSE OF TREATMENT section was not displaying. This has been fixed. -------------------------------------------------------------------------------- The following NOIS calls have been resolved by this patch: BIG-0697-71576 No info State Disc (notes 9,14,15) ALB-0698-51661 Error in Zip Code file with a State code BHH-0698-42176 Zip Code file has many states with #80 ASH-0898-31OO2 ABSTRACT STATUS NOT COMPLETE REPORT CONTAINS COMPLETED ABS ANN-0898-41856 ONC*2.11*18 CAUSING PROBLEM? LIT-1098-70496 BPIT+2^ONCOTNMX, Undef X LIT-1098-70498 GUIT+2^ONCOTNMX, Undef X -------------------------------------------------------------------------------- Routine Summary: ================ The following routines are included in this patch. The second line of these routines should look like: ;;2.11;ONCOLOGY;**[patch list]**;Mar 07, 1995 CHECK^XTSUMBLD results: Routines Before Patch 19 After Patch 19 Patch List =========== =============== ============== ============= ONCATF N/A 11794856 19 ONCATF1 N/A 4228832 19 ONCDTX 12966232 14723303 13,15,19 ONCDTX1 N/A 7279698 19 ONCNTX 13082168 14401081 13,15,16,19 ONCNTX1 3545102 8834728 15,16,19 ONCOAI 13032491 12787670 6,15,17,18,19 ONCOAIP 15765147 19998579 1,5,6,7,11,13,15,16,18,19 ONCOAIP2 937832 1046131 19 ONCOAIT 1026402 1083747 15,19 ONCOANC3 7148227 8752000 19 ONCOCC 2975208 10893859 5,13,16,19 ONCOCOM 15442946 15242819 1,6,11,12,13,14,16,17,19 ONCOCOS 9953009 9710014 5,13,16,17,19 ONCODEL 8236345 8828741 7,15,19 ONCODIS 1041980 1042044 6,7,9,10,11,12,13,14,15, 16,17,18,19 ONCOIT 618908 1953407 18,19 ONCOPA1A 7588219 7913245 15,19 ONCOPA2 18474624 22856728 13,15,19 ONCOPCE 10100981 10010901 6,7,11,13,16,18,19 ONCOSUR 14687476 13881669 15,18,19 ONCOSUR1 7095181 8804548 15,18,19 ONCOSUR2 9767510 11449749 15,19 ONCOTN 19437731 20294449 1,3,6,7,11,15,19 ONCOTNE 4923248 6515782 1,6,15,18,19 ONCOU55 10419020 10481765 6,7,15,19 ONCPCI 2041184 4284452 15,19 ONCPRE19 N/A 2358079 19 ONCPSD 2073605 2298129 15,19 ONCPST19 N/A 461726 19 ONCPTX 12501698 15759914 13,15,17,19 ONCTXSM N/A 7089964 19 ONCUTX 11098064 10256969 13,15,16,19 ONCUTX1 N/A 5970240 19 Installation instructions: ========================= 1. This patch is being distributed as a KIDS Host File: ONC211P19.KID 2) This patch should be installed when the ONCOLOGY users are off the system. 3) There are no patch dependencies associated with this patch. If the routines in this patch are mapped at your site, remember to disable mapping before installing the patch and to re-enable it when you are finished. 4) The routines included in this patch should be installed in the production UCI. 5) When installing this patch you will see the following messages: "Installing Data Dictionaries: Data Dictionary for File #164.2 not installed......." This is normal and does NOT indicate a problem. 6) This patch will take approximately 10 minutes to install. Only Oncology users need to be off the system. The ONCOLOGY options do not need to be disabled during the installation of this patch. Your customer support representative will answer any questions regarding this patch. Routine Information: ==================== Routine Name: - ONCATF Routine Checksum: Routine Name: - ONCATF1 Routine Checksum: Routine Name: - ONCDTX Routine Checksum: Routine Name: - ONCDTX1 Routine Checksum: Routine Name: - ONCNTX Routine Checksum: Routine Name: - ONCNTX1 Routine Checksum: Routine Name: - ONCOAI Routine Checksum: Routine Name: - ONCOAIP Routine Checksum: Routine Name: - ONCOAIP2 Routine Checksum: Routine Name: - ONCOAIT Routine Checksum: Routine Name: - ONCOANC3 Routine Checksum: Routine Name: - ONCOCC Routine Checksum: Routine Name: - ONCOCOM Routine Checksum: Routine Name: - ONCOCOS Routine Checksum: Routine Name: - ONCODEL Routine Checksum: Routine Name: - ONCODIS Routine Checksum: Routine Name: - ONCOIT Routine Checksum: Routine Name: - ONCOPA1A Routine Checksum: Routine Name: - ONCOPA2 Routine Checksum: Routine Name: - ONCOPCE Routine Checksum: Routine Name: - ONCOSUR Routine Checksum: Routine Name: - ONCOSUR1 Routine Checksum: Routine Name: - ONCOSUR2 Routine Checksum: Routine Name: - ONCOTN Routine Checksum: Routine Name: - ONCOTNE Routine Checksum: Routine Name: - ONCOU55 Routine Checksum: Routine Name: - ONCPCI Routine Checksum: Routine Name: - ONCPRE19 Routine Checksum: Routine Name: - ONCPSD Routine Checksum: Routine Name: - ONCPST19 Routine Checksum: Routine Name: - ONCPTX Routine Checksum: Routine Name: - ONCTXSM Routine Checksum: Routine Name: - ONCUTX Routine Checksum: Routine Name: - ONCUTX1 Routine Checksum: ============================================================================= User Information: Entered By : ACKERMAN,WILLIAM Date Entered : NOV 09, 1998 Completed By: PATRICK,PAT Date Completed: DEC 18, 1998 Released By : CONSENTINO,ALBERT Date Released : DEC 21, 1998 ============================================================================= Packman Mail Message: ===================== No routines included